🧬 AI GWAS Data Fetcher
Synthesize Genotype, Phenotype, and Summary Statistics via AI APIs
Zhang WJ, Qi YH. 2026. Fetching GWAS (Genome-Wide Association Study) data via AI: A web tool to synthesize genotype, phenotype, and summary statistics. Ornamental and Medicinal Plants, 9(1-4): 1-21
AI Provider
DeepSeek API
Google Gemini
OpenAI GPT-4/3.5
API Key
📌 How to get AI API keys:
• DeepSeek:
platform.deepseek.com
• Gemini:
makersuite.google.com/app/apikey
• GPT:
platform.openai.com/api-keys
1. Core Inquiry Variables
Phenotype / Trait
Population / Ancestry
European (EUR)
East Asian (EAS)
South Asian (SAS)
African (AFR)
Admixed American (AMR)
Multi-ancestry
2. Genomic Context
Variant ID (Optional)
Target Gene (Optional)
Genomic Region
3. Quality Filters
P-value Threshold
Genome-wide sig (< 5e-8)
Suggestive (< 1e-5)
Nominal (< 0.05)
Min. Allele Frequency (MAF)
Min. Info Score
Fetch Data
Summary Statistics
Phenotype File
Metadata & Logs
GWAS Summary Statistics
Download .TSV
CHR
SNP
BP
A1 (REF)
A2 (ALT)
FRQ_A1
BETA
SE
P
N
INFO
Individual-Level Phenotype & Covariates
Download .PHE
Simulated sample subset
FID
IID
PHE (Trait)
SEX
AGE
PC1
PC2
Genotyping_Batch
Study Metadata & Protocol Info