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To be Java-enabled, you can download a free JRE(Java Runtime Environment), like JRE6, from Java download page. And then download this file, unzip it to get the file, java.policy, and copy and past it to the "security" directory of JRE, e.g., C:/Program Files/Java/jre6/lib/security/, to replace the original file, java.policy. If it can't function, just follow the steps: (1) Open the menu "Start" of Windows, click "Programs", find "Java", and click "Set Java" to open Java Control Panel; (2) In the Java Control Panel, click the page "Security"; (3) In the "Exception Site List", double-click the URL that you want to edit in the Exception Site List window, make changes to the URL, and click OK to save the changes. For applets, the URL for the document base of the applet must be in the list. For example, a full URL is "file:///E:/Program Files/java/bin/BoundDetector.html".
The user is suggested to downloading demo data files and saving them for testing the programs. The user may creat data file using Notepad or MS DOS editor or Text Editor. The data file must carry the .txt extension and be space-delimited plain text file. The first of each row in the data file must be a (or several) space(s). Values or numbers are separated by spaces.

CommDivEvenTest: Statistic Test of Community Diversity and Evenness (Demo Data File: 11 taxa)

CommStrucComp: Structure Comparison of Two Communities (Demo Data Files: Community 1: 7 taxa, 13 samples; community 2: 5 taxa, 15 samples)
Source: Computational Ecology and Software, 2011, 1(3):183-185

HierarClusterAnal: Hierarchical Cluster Analysis of Networks (Demo Data File: 14 networks, 6 attributes)

netConnCreate: Creating Real Network with Expected Degree Distribution (Demo Data File: 9 degree groups)

netConnCreation: Creating Real Network with Expected Mean and Variance of Degree Distribution

netEvolve: A Method for Network Evolution (Demo Correlation File : 23 taxa) (Demo Attribute File : 23 taxa)
Source: Network Biology, 2012, 2(2):69-78

NetOneDimCluster: One-dimensional Cluster Analysis of Time Series of Network (Demo Data File: 6 nodes, 7 time points)

NetStructComp: Structure Comparison of Networks (Demo Data File: 4 networks, 25 nodes)
Source: Network Biology, 2011, 1(2):130-133

SampHomoTest: Test of Sample's Homogeneity and Sampling Completeness (Demo Data File: 19 taxa, 35 samples)
Source: Network Biology, 2011, 1(2):127-129

SpatDistriGen: Generation of Initial Spatial Distribution for Cell Automata
Source: Computational Ecology and Software, 2011, 1(4):244-248

TaxaRichEstim: A Simple Method To Estimate Taxa Richness (Demo Data File: 19 taxa, 35 samples)

TwoDimBoundDetector: Two-dimensional Ordered Cluster Analysis of Component Groups in Self-organization (Demo Data File: 8 indices, 15 sampling sites)
Source: Selforganizology, 2014, 1(2)

associCoeff: Some Algorithms to Measure Interspecific Association (Demo Data File: 21 taxa, 35 samples)
Source: Selforganizology, 2014, 1(2)

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